/trekresearch loses Phase 4.5, the bounded Phase 5 loop (Phase 5 keeps its
single pass of at most 2 follow-ups), the --engine flag, the deep-research
adapter and its output self-check. hooks.json loses the pre-agent-cap
PreToolUse entry (README: 9 hooks = 9 scripts). The STORM env vars leave the
docs; query-privacy-gate.mjs stays, called by no command, and says so.
Files removed: 13 (4 docs, 1 hook, 1 lib module, 1 script, 5 tests, 1 fixture).
Files edited: 17. Tests: 2600 (2598 pass / 0 fail / 2 skipped) before,
2467 (2466 pass / 0 fail / 1 skipped, R3 pending) after.
Durable check: group R2 green and no longer pending.
Co-Authored-By: Claude Opus 5.5 <noreply@anthropic.com>